applications present in swarm..

what are they ???
where are they ???
how to run them ???

raw data -> repeat masker -> pace -> cap3 -> blast

repeat masker is used to eliminate the junk est's

pace is used to cluster the est's (organizing the est's into groups)......learn about talon

cap3 is used to create a sequence from the cluster .

blast is used to compare the sequence with the data present in database and intimate what kind of sequence it is. which gene it is ..........